Effective salary management is an important prerequisite for building high-level universities. However，in practice，both macro level salary governance in the government and micro level salary governance in universities face challenges. With the coordinated development of education，technology and talent，university salary governance needs to take account of both macro and micro levels. It is necessary to focus on both macro level reform empowerment and the construction of internal micro governance systems in universities. Based on this，this article constructs a dual governance system of university salary from both macro and micro levels，and systematically analyzes the difficulties faced by macro and micro governance. Suggestions are proposed to provide reference for the reform of Chinese university salary system.